Nutrition · Fermented Foods
Fermented Foods: Benefits, Best Types & How Much to Eat
How fermentation turns milk, cabbage and soybeans into living foods, which fermented foods still carry live cultures when you buy them, what the gut and inflammation research shows, and how to add them to your day without the bloat.

Fermented foods are foods that microbes have transformed on purpose: milk into yogurt and kefir, cabbage into sauerkraut and kimchi, soybeans into miso and natto. Fermentation adds flavor, keeps food longer and creates compounds the raw food never had, and the unheated versions bring live microbes to your gut. In a 10-week Stanford diet study, adults who built up to about six servings of fermented foods a day showed broader gut microbial diversity and lower levels of 19 of 93 inflammatory proteins in the blood, while a high-fiber diet lowered none of those 19.1 Pooled trials also link fermented foods to more regular digestion, and live yogurt cultures help people who digest lactose poorly.
- Best choices: yogurt and kefir, sauerkraut, kimchi, kvass, miso, natto and real sourdough
- Everyday amount: start with a teaspoon or two and build to 2 to 3 tablespoons a day
- For live cultures: look for "fermented" or live-culture wording and products that weren't heated after fermenting
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Pack shredded cabbage and salt into a jar, press it under its own brine and wait. Within days, the bacteria already living on the leaves wake up, eat the cabbage's natural sugars and turn them into lactic acid. Plain cabbage becomes sauerkraut: sour, crunchy, slow to spoil and full of living microbes.2
That quiet change is why fermented foods have been part of traditional diets for thousands of years,2 and it's why I rank traditional ferments like sauerkraut, kimchi, kvass, kefir, yogurt and miso among the most anti-inflammatory foods you can eat.3 If your digestion feels off, if you're rebuilding your gut after a course of antibiotics, or if you simply want every meal to do more for you, fermented foods are one of the easiest places to start. They cost little, they keep for weeks in the fridge, and a few tablespoons a day is enough to begin.
The habit is older than you might think. When chemists analyzed the residue inside pottery jars from a Neolithic village in China, they found a fermented drink of rice, honey and fruit made as early as the seventh millennium B.C.4 What's new is the research. A landmark Stanford trial, pooled studies on digestion and blood sugar, and head-to-head tests of fresh and pasteurized sauerkraut now show what fermentation does in your body, what it doesn't, and which jar on the shelf is worth your money.
Fiber helps you go deep and build more, but fermented foods help you go wider.Dr. Josh Axe, DC, DNM, CNSFrom The Shocking Reason Your Anxiety, Brain Fog & Bloating May Start in Your Gut, The Dr. Josh Axe Show (2026), at 45:01
Did you know?
Under U.S. rules, yogurt can carry the optional live and active cultures claim only if it has at least 10 million colony-forming units per gram when it's made, with a reasonable expectation of at least 1 million through its shelf life. Yogurt treated after culturing to inactivate its microbes must say it doesn't contain live and active cultures.5
Natto, the sticky fermented soybean dish from Japan, carries about 775 micrograms of vitamin K2 (MK-7) per 100 grams.6
In an 87-person trial, systolic blood pressure dipped slightly on pasteurized sauerkraut, with no live bacteria left, just as it did on fresh sauerkraut.7
Strong for lactose digestion; moderate for digestion, IBS relief, blood sugar and heart health; emerging for inflammation and bone support.
Skip high-tyramine ferments if you take an MAOI antidepressant, skip natto if you take warfarin, and don't take ciprofloxacin with dairy alone. The safety section below has the details.

What is a fermented food?
A fermented food is one made through desired microbial growth, where bacteria, yeasts or molds convert part of the food into acids, gases or alcohol. That's the definition an international expert panel adopted in 2021.2 Yogurt, kefir, sauerkraut, kimchi, kvass, miso, natto, tempeh, sourdough bread and vinegar all qualify, but not every fermented food still carries live microbes by the time you eat it.
Fermented foods and probiotic foods overlap, but they aren't the same thing. A fermented food is defined by how it was made. Refrigerated sauerkraut may contain live microbes without meeting the scientific criteria for a probiotic food, because probiotic status requires identified live microorganisms with evidence of a health benefit at the amount you eat.2 A loaf of sourdough is fermented and no longer alive at all, because baking kills the microbes that raised it. Both kinds can be worth eating.
The same goes for pickles, and this is where labels can mislead you. A true fermented pickle is a cucumber left in salt brine until lactic acid bacteria turn it sour on their own. Other pickles are acidified with vinegar without ever fermenting, so they taste tart for a different reason.2 The live-cultures shopping guide below shows how to tell them apart. You've probably been eating fermented food longer than you realized, too. Chocolate is made from fermented cacao beans, and researchers now study it alongside yogurt and cheese.12
A short history of fermented foods
Before refrigerators, fermentation was how families kept food through the seasons, and over time it became a way of eating people treasured for its own sake. In biblical times, milk was often fermented to keep it longer. Milk from sheep and cows became yogurt or kefir, was curdled into cheese or was churned into butter, and bread dough rose slowly with wild yeasts from the environment.15 Kimchi remains a traditional staple of Korean cooking,16 and natto has long been part of the Japanese diet.17
Fermented foods nutrition facts
Nutrition depends on what was fermented. A 6-ounce cup of plain whole-milk yogurt gives you about 6 grams of protein, 16% of the daily value for calcium and 26% for vitamin B12. A 40-gram pack of natto, the size used in Japanese studies,17 adds 8 grams of protein and 19% of your daily iron. A quarter cup of canned sauerkraut or kimchi has fewer than 10 calories but 189 to 231 mg of sodium, and a tablespoon of miso has about 634 mg.1819202122
| Food (serving) | Calories | Standout nutrients per serving | Sodium per serving | Sodium per 100 g |
|---|---|---|---|---|
Plain whole-milk yogurt (6 oz, 170 g) | 104 | 5.9 g protein; 206 mg calcium (16% DV); 0.6 mcg vitamin B12 (26% DV) | 78 mg | 46 mg |
Natto (1 pack, about 40 g) | 84 | 7.8 g protein; 3.4 mg iron (19% DV); 87 mg calcium (7% DV); about 310 mcg vitamin K2 (MK-7) | 3 mg | 7 mg |
Kimchi (1/4 cup, 38 g) | 6 | 17 mcg vitamin K (14% DV); 20 mcg folate (5% DV); 1.0 mg iron (5% DV) | 189 mg (8% DV) | 498 mg |
Sauerkraut, canned (1/4 cup, 35 g) | 7 | 1 g fiber; 5 mg vitamin C (6% DV); 4.6 mcg vitamin K | 231 mg (10% DV) | 661 mg |
Miso (1 tbsp, 17 g) | 34 | 2.2 g protein; 5 mcg vitamin K | 634 mg (28% DV) | 3,730 mg |
Here's how to read that table. Yogurt and natto are real sources of protein and minerals, so they can carry part of a meal. A forkful of sauerkraut or kimchi is more about the living microbes and the compounds they leave behind than about vitamins, which is why a little goes a long way. Serving values are calculated from the gram weights shown, and brands and packing density vary. Daily values follow the FDA's label standards,23 and the natto vitamin K2 figure comes from a Japanese study that measured regular natto at 775 micrograms per 100 grams.6 The one number to keep an eye on is sodium, which adds up faster than anything else on the table.
What are fermented foods good for?
Fermented foods are best supported for digestion: pooled trials show more regular bowel movements and fewer digestive symptoms, and live yogurt cultures help people who digest lactose poorly.89 Human studies also link them to broader gut diversity, lower inflammatory proteins, better insulin markers and, in large cohorts, a lower risk of dying from heart disease.11112
| Benefit | Evidence | What was studied | What the research shows |
|---|---|---|---|
Digestive regularity and comfort | Moderate | Healthy adults; mixed fermented foods | More frequent stools, fewer hard stools, less flatulence, fewer digestive symptoms8 |
Easier lactose digestion | Strong | Adults with lactose maldigestion; yogurt and kefir | Live cultures improve lactose digestion; plain kefir cut breath hydrogen 61% vs. milk924 |
Gut diversity and inflammation | Emerging | Healthy adults; about 6 servings a day, 10 weeks | Diversity rose; 19 of 93 inflammatory proteins fell1 |
IBS symptom relief | Moderate | 975 people with IBS (12 trials) | 22% more likely to report symptom relief25 |
Blood sugar and insulin | Moderate | Adults with diabetes or prediabetes; kefir drinkers | Lower fasting glucose and insulin resistance; kefir lowered fasting insulin and insulin resistance1126 |
Heart health and longevity | Moderate | Whole review: 50 cohorts, more than 3 million participants; fermented-milk all-cause analysis: 1,172,824 participants | Highest vs. lowest fermented-milk intake: about 6% lower risk of death from any cause12 |
Bone support (natto) | Emerging | Postmenopausal Japanese women | 7+ packs a week linked to 44% lower fracture risk17 |
How do fermented foods work in your body?
Fermented foods work in three main ways: they bring live microbes into your gut, fermentation predigests the food so nutrients are easier to use, and the microbes leave useful compounds behind that keep working even after the food has been heated.
Live microbes pass through. Unheated ferments deliver lactic acid bacteria and yeasts, and they tend to pass through rather than settle in: in a trial in which each of the 110 healthy adults tried both diets, a bacterium found in yogurt appeared in stool during daily yogurt and then faded, so regular intake is what keeps them present.27
Fermentation predigests the food. The bacteria in yogurt carry their own lactase, which survives stomach acid and helps digest the milk sugar in the small intestine.28 Long fermentation also breaks down phytic acid in grain: leavening cut the phytate in bran bread to about 15% of its starting level after two days, and zinc absorption rose in 42 volunteers.29
Useful compounds stay behind. Fermentation creates organic acids, peptides and vitamins such as the K2 in natto.26 Some preparations of inactivated microbes or their parts have shown health benefits and qualify as postbiotics, though heating a fermented food doesn't automatically make it one.30 In one trial, only pasteurized sauerkraut raised short-chain fatty acids in the blood, a finding researchers are still working to explain.31
| 1. Live yogurt cultures | 2. Bacterial lactase | 3. Less undigested lactose | 4. Easier digestion |
|---|---|---|---|
Starter bacteria arrive alive in the yogurt9 | Their lactase helps break down milk sugar in the small intestine28 | Less undigested lactose reaches the colon28 | Easier lactose digestion in people who digest it poorly9 |
Short-chain fatty acids are the thread that ties much of this together. When gut bacteria ferment fiber, they make acetate, propionate and butyrate, which fuel the cells lining your colon and act as signals that affect metabolism and other body processes.32 That's why fiber-rich plants and fermented foods work together. In the Stanford trial, the high-fiber diet boosted the microbial enzymes that break down fiber, with immune responses that depended on the microbes each person started with, while the fermented diet widened the range of species.1 Feed the gut with plants, seed it with ferments, and you give it both halves of what it needs.
Health benefits of fermented foods, ranked by evidence
These are the best-supported benefits of fermented foods, ranked by the strength of the human research. Each card names the food and the people studied.
Digestive regularity and comfort
Moderate evidenceHuman studyMeta-analysis · 19 RCTsA 2025 review of 25 studies with 4,328 healthy adults pooled 19 randomized trials, many of them testing fermented milk drinks made with specific probiotic strains. Fermented foods increased stool frequency and cut the risk of hard stools by about 61%, both rated moderate certainty, and slightly reduced flatulence, rated high certainty. They also improved stool consistency on the Bristol scale, overall digestive symptoms and transit time, with lower certainty for those.8
Easier lactose digestion
Strong evidenceHuman studyRegulatory review · crossover trial · 15 adultsEuropean food-safety regulators reviewed the human studies and accepted that live yogurt cultures improve lactose digestion in people who digest it poorly, for yogurt carrying at least 100 million live starter bacteria per gram.9 Kefir helps too. In 15 adults with lactose maldigestion given single test meals with 20 grams of lactose, plain kefir cut breath hydrogen, the marker of undigested lactose, by 61% compared with milk, an eight-hour breath total of 87 versus 224 ppm·h, and yogurts and kefirs all eased gas by a similar 54% to 71%; on the breath test, flavored yogurt did as well as plain, and flavored kefir did less well than plain kefir.24
Breath hydrogen after a 20-gram lactose meal
Broader gut diversity and lower inflammation
Emerging evidenceHuman studyDiet trial · 18 adults per dietIn the Stanford trial, building up to about six servings of fermented foods a day raised gut microbial diversity and lowered inflammatory proteins in the blood.1 The inflammation section below has the full study.
Study takeaway: a fermented-food diet lowered 19 of 93 inflammatory proteins in 10 weeks; a high-fiber diet lowered none of those 19.
IBS symptom relief
Moderate evidenceHuman studyMeta-analysis · 16 RCTs · 1,264 peopleIn a review of 16 randomized trials in people with irritable bowel syndrome, fermented foods made people 22% more likely to report symptom relief in the 12 trials (975 people) that measured it, and fermented milk, often made with added probiotic strains, showed a benefit on its own; abdominal pain and bloating scores didn't improve.25 In a Norwegian pilot of 34 people with IBS, symptom scores improved over six weeks of daily sauerkraut in both the pasteurized and the unpasteurized group.33 See our IBS diet guide for the rest of the plan.
Blood sugar and insulin support
Moderate evidenceHuman studyMeta-analyses · 18 RCTs and 6 RCTsIn a meta-analysis of 18 randomized trials in 843 adults with diabetes or prediabetes, fermented foods lowered fasting blood sugar, insulin resistance, total and LDL cholesterol and diastolic blood pressure compared with control diets.11 In a meta-analysis of six kefir trials (314 people), kefir lowered fasting insulin by about 3.7 micro-units per milliliter and insulin resistance (HOMA-IR) by about 2.6 points, though it didn't change fasting glucose, HbA1c, cholesterol or weight.26 In a meta-analysis of five small kimchi trials, fermented kimchi lowered fasting blood sugar by about 2 mg/dL,34 and in seven cohort studies, people who ate the most yogurt had a 27% lower risk of developing type 2 diabetes.35
Heart health and longevity
Moderate evidenceHuman studyMeta-analysis · 50 cohorts · 3 million+ adultsA 2026 meta-analysis of 50 cohort studies, which follow what people choose to eat over years, found that people who ate the most fermented milk, including yogurt, had about a 6% lower risk of dying from any cause, about a 7% lower risk of dying from cardiovascular disease and about a 6% lower risk of dying from cancer than those who ate the least. Chocolate showed similar links, with about a 10% lower risk of dying from any cause and about a 16% lower risk of dying from cardiovascular disease. Cheese was tied to about a 3% lower risk of dying from any cause. Miso rests on a single cohort, which found about an 8% lower risk of dying from any cause, and bread on just two studies, too few to show a clear link.12
Bone support from natto
Emerging evidenceHuman studyCohort · 1,417 womenIn a study of 8 men, natto enriched with extra vitamin K2 raised blood levels of vitamin K2 and of the activated form of osteocalcin, a bone protein that needs vitamin K to do its job, and among 134 adults, men who regularly ate ordinary natto had higher levels of both than men who didn't.6 In 1,417 postmenopausal Japanese women followed for a median of 15 years, eating seven or more packs of natto a week was linked to a 44% lower risk of osteoporotic fracture than eating less than one pack, even after accounting for bone density.17 Learn more about vitamin K2.
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- The 6R roadmap: Remove, Replace, Reinoculate (where fermented foods do their work), Repair, Rebalance and Reframe
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Open the free protocol → →Can fermented foods lower inflammation?
They can help. In the Stanford trial, a diet rich in fermented foods lowered 19 of 93 inflammatory proteins in 10 weeks, and pooled trials show lower TNF-alpha.110 They do the most as one part of an anti-inflammatory diet, eaten alongside plenty of fiber-rich plants.
Here's why researchers think it works. The lining of your intestine is a single layer of cells, and it's the border between what you eat and your immune system. Researchers propose that the live microbes, acids and other compounds in fermented foods support that lining and calm the immune activity behind low-grade inflammation.2 The human trial below measured the result directly in the blood.
| High fermented-food diet | High-fiber diet | |
|---|---|---|
Daily intake | 0.4 → 6.3 servings of fermented food | 21.5 → 45.1 g of fiber |
Gut microbial diversity | Rose steadily | Stayed stable |
Inflammatory proteins that fell (of 93) | 19, including IL-6 | 0 of those 19 |
Digestive changes | More bloating during the build-up, no longer significant later | Softer stools |
The trial analyzed 36 healthy adults, 18 on each diet. The fermented-food group built up over four weeks and held the diet for six more, and the trial's main immune-response measure didn't change.1
Inflammatory proteins lowered in 10 weeks
When researchers pooled 26 trials in 1,461 adults, fermented foods lowered TNF-alpha, one of the body's main inflammatory messengers, though CRP and IL-6 didn't change.10 In a 2026 German trial, 87 healthy adults ate 100 grams of fresh or pasteurized sauerkraut a day for four weeks; systolic blood pressure dipped slightly on both, while their inflammation markers didn't broadly change.7 Kefir told a similar story. In 65 young adults, a daily 250-milliliter glass of lactose-free kefir eased digestive symptoms within six weeks without moving inflammation markers.36
Live cultures matter more for some benefits than for others. Lactose digestion depends on live yogurt cultures,9 while that blood pressure dip and the IBS improvement in the Norwegian pilot showed up with pasteurized sauerkraut too, and the rise in blood short-chain fatty acids came only with the pasteurized version.73331 So enjoy both kinds, buy the refrigerated jar when live cultures are the point, and don't pay extra for a shelf-stable jar labeled "probiotic."
Four inflammation and nutrient markers worth knowing
hs-CRP, vitamin D, ferritin and vitamin B12 add useful context about inflammation and nutrient status. They can't tell you whether your gut is damaged or healing, or which foods agree with you, but they show the broader picture. The targets are the ones Dr. Axe prefers, functional ranges that are tighter than standard lab ranges.
- hs-CRP: Low-grade inflammation anywhere in the body. Dr. Axe's target is under 1.0 mg/L.
- Vitamin D (25-OH): A nutrient involved in immune balance. Dr. Axe's target is 50–80 ng/mL.
- Ferritin: Iron stores, which depend on healthy absorption. Dr. Axe's target is 50–120 ng/mL for women and 75–150 ng/mL for men.
- Vitamin B12: Depends on a healthy small intestine. Dr. Axe's target is 600–1,000 pg/mL.
See the cellular bloodwork panel
Upload a recent panel to see each marker against functional ranges. The panel page shows what's included, how the draw works and who reviews the results.
Have results? Analyze them free → →Which fermented foods still have live cultures?
Sauerkraut and kimchi labeled fermented that weren't heated after fermenting (usually sold refrigerated), yogurt labeled "live and active cultures," kefir, unpasteurized kombucha, natto and unpasteurized miso still contain live microbes. Baked sourdough, cooked tempeh and shelf-stable sauerkraut don't, because heat removed them, though they can still carry useful compounds, and pickles made only with vinegar were never fermented.25
| Food | Live cultures when you eat it? | What to look for | Good to know |
|---|---|---|---|
Yogurt | Usually | "Live and active cultures" | Heat-treated yogurt must say it doesn't contain them |
Kefir | Yes | Plain, unflavored | Flavored kefir did less for lactose digestion in one trial24 |
Sauerkraut, refrigerated | Usually; confirm the finished product | "Fermented" or live-culture wording | Refrigeration is a clue, not proof |
Sauerkraut, shelf-stable | No | Center-aisle cans and jars | Heat-treated for shelf life; compounds remain |
Kimchi | Usually; confirm the finished product | Refrigerated; check the seasoning | Many recipes use salted shrimp; see below |
Kombucha | Sometimes | "Raw" or "unpasteurized" | Watch the added sugar |
Miso | Yes, if unheated | Refrigerated, unpasteurized | Very hot soup can kill the cultures; follow the label |
Natto | Yes | Refrigerated or frozen packs | Avoid on warfarin |
Tempeh | No | Refrigerated block | Cooked before eating; a fermented protein |
Sourdough bread | No | Starter, flour, water, salt | Baking kills the microbes; lower phytate remains |
Pickles fermented in brine | Yes, if not heated afterward | "Fermented" or live-culture wording | The traditional method |
Pickles acidified with vinegar | No | No fermentation claim | Tart, but not fermented |
At the store, four quick checks cover the important decisions. First, look for explicit fermentation and live-culture information on the package. Second, check whether the product was heated after it fermented, since refrigeration alone doesn't confirm it. Third, don't mistake pasteurized milk for a dead product: yogurt can be made from pasteurized milk and still contain live cultures, because heating before fermentation is different from heating afterward.5 Fourth, check the sodium and the added sugar, since a sweetened kombucha or flavored kefir can carry more sugar than you'd guess.
What are the best fermented foods to eat?
The best fermented foods for your gut are the live ones you'll eat most days: yogurt and kefir first, then sauerkraut and kimchi, kvass, miso and natto, and raw or aged cheese, with real sourdough as the best fermented bread. Each one brings something a little different.
Fermented dairy: yogurt, kefir and cheese
Yogurt and kefir are my top two probiotic foods, because they tend to carry the most bacteria.37 If you choose dairy yogurt or kefir, I recommend one made from A2 milk, from an A2 cow, a sheep or a goat.37 Kefir is fermented by both bacteria and yeasts from kefir grains,26 and plain versions skip the added sugar that flavored cups carry. If you avoid dairy, coconut yogurt, coconut kefir and water kefir offer other fermented options. Check their live cultures and nutrition labels, since the dairy studies described here don't establish identical benefits for these alternatives. Raw and aged cheeses and cultured cottage cheese can carry live cultures too, in smaller amounts. See kefir vs. yogurt for a closer comparison, and A2 milk for why the milk matters.
Fermented vegetables: sauerkraut, kimchi, kvass and brine pickles
Sauerkraut and kimchi are inexpensive, easy to find and easy to make at home. Kvass, a fermented beet or vegetable juice, is a drinkable option if you'd rather sip than chew,37 and brine pickles made with only salt and water count too. One kimchi note: many traditional recipes are seasoned with jeotgal, a salted seafood that can be shrimp (saeu-jeot) or anchovy (myeolchi-jeot).39 Shrimp doesn't meet the fins-and-scales standard I follow from The Biblio Diet,15 so read the label and choose kimchi seasoned with anchovy or anchovy fish sauce (check that the label lists no shrimp), or a seafood-free style like Korean temple kimchi.16 Or make it yourself with our kimchi recipe.
Fermented soy: natto, miso and tempeh
Fermented organic soy, meaning natto, miso and tempeh, is the soy I recommend, especially for women going through or past menopause, while processed soy like soy milk is the kind I steer away from.40 Natto is sticky, strong and worth getting used to for its vitamin K2. For live cultures from miso, choose one that contains them and follow the maker's serving instructions, since soup can remain very hot after the heat is switched off. Tempeh is cooked before you eat it, so enjoy it as a fermented protein rather than a probiotic.
Sourdough, kombucha and apple cider vinegar
Real whole-grain sourdough, ideally made from an ancient grain such as einkorn, is the bread I rank first.15 Its long fermentation breaks down phytic acid, the same effect longer leavening had in the bran bread study above.29 In single-meal studies, fermented breads raised iron uptake, especially low-phytate ones, though longer trials haven't yet shown higher iron stores.41
Kombucha is fermented sweet tea, and it's easy to find, but I consider it less beneficial than the fermented foods above. A little on occasion is fine for a lot of people; skip it if you're dealing with Candida.37 The trials so far are modest. In 59 adults with excess weight, adding 200 milliliters of green tea kombucha a day to a calorie-controlled diet didn't add weight loss over 10 weeks, though it lowered a measure of body-fat accumulation and kept IL-6 from rising as it did in the diet-only group, while four weeks of kombucha in 24 healthy adults brought no significant change in blood markers or inflammation.4243 If you enjoy it, choose one low in sugar and keep it an occasional drink. Apple cider vinegar is fermented as well; it's low in live probiotics, and its value comes from its organic acids.37
Not sure which fermented foods fit you?
Ask Dr. Axe AI about your gut, your tolerance and your medications, and it will suggest where to start. Answers are grounded in this library, with sources shown.
How much fermented food should you eat a day?
There's no set dose. Start with a teaspoon or two and build to 2 to 3 tablespoons a day.13
I recommend 2 to 3 tablespoons a day of fermented vegetables like sauerkraut or kimchi, or cultured dairy like kefir, if you tolerate them; it's the amount built into my Anti-Inflammatory Reset.13 The build-up matters more than the target. The Stanford trial built up to about six servings a day over four weeks, where a serving was 6 ounces of yogurt, kefir or kombucha, or a quarter cup of sauerkraut or kimchi. Bloating rose during that build-up and was no longer significant by the end of the maintenance weeks.1 The plan below starts smaller and builds more gently than the trial did.
| Week | Daily amount | What it looks like |
|---|---|---|
| 1 | 1 to 2 teaspoons | A forkful of sauerkraut with dinner, or a splash of its juice |
| 2 | About 1 tablespoon | Kimchi beside your eggs or a spoonful of kefir in a smoothie |
| 3 | 2 tablespoons | Split between two meals, two different ferments |
| 4 and on | 2 to 3 tablespoons, or more if you feel well | Rotate tolerated cultured dairy and fermented vegetables; use miso as a seasoning, with its sodium counted separately |
If gas or bloating shows up, hold at your current amount for another week rather than quitting, and choose milder, less sour ferments for a while. If you don't tolerate fermented foods well, you don't need to force them; I'd use a probiotic supplement instead.14 Pair your ferments with prebiotic fiber from garlic, onions, asparagus, oats and slightly green bananas, since the microbes you add need food too.37 Our prebiotic foods guide has the full list.
Easy ways to eat more fermented foods
Fermented foods work best as small, daily additions to meals you already eat: a spoonful beside your eggs, a cup of kefir in a smoothie, miso stirred into soup at the end.
How to make sauerkraut at home
Homemade sauerkraut needs cabbage, salt, a suitable fermentation container and a few weeks. Follow a tested recipe with measured amounts, like the one below from the National Center for Home Food Preservation, and see our sauerkraut recipe for serving ideas.
Use 3 tablespoons of canning or pickling salt for every 5 pounds of cored, shredded cabbage, and mix it in with clean hands until the cabbage releases its juice.44
Pack the cabbage firmly into a suitable food-grade fermentation container and keep it submerged with a plate and weights. If the juice doesn't cover it, add boiled and cooled brine made with 1 1/2 tablespoons of salt per quart of water. If you use jars as weights, check it two or three times a week and skim off any scum that forms.44
At 70 to 75°F, kraut is fully fermented in about 3 to 4 weeks; at 60 to 65°F it can take 5 to 6 weeks. It's done when the bubbling stops; then keep the finished kraut tightly covered in the refrigerator.44
Are fermented foods better than probiotic supplements?
Fermented foods and probiotic supplements do different jobs, and you don't have to choose. Food brings a wide mix of microbes plus the compounds they made, inside a whole food. A supplement brings specific strains at a known dose, which is useful when a whole food doesn't agree with you or when you need more than food can give.
| Fermented foods | Probiotic supplements | |
|---|---|---|
What you get | Many microbes, plus acids, peptides and vitamins they made | Specific strains at a stated dose |
Strongest human evidence | Digestion, lactose digestion, gut diversity | Specific strains for specific conditions |
Works after heating? | Partly; compounds remain | Depends on the product |
Best for | Everyday gut support and variety | People who don't tolerate ferments, or targeted needs |
Fermented foods and antibiotics
When you truly need an antibiotic, take it exactly as prescribed, and let food help your gut through the course. In 202 hospitalized adults on antibiotics, adding 8 ounces of yogurt a day cut the rate of diarrhea in half, from 24% to 12%.45 When researchers pooled the two yogurt trials (314 people), the risk was 44% lower in one statistical model, a result that didn't hold in the second.46 In 82 people with H. pylori infection, adding 250 milliliters of kefir twice a day to standard triple therapy raised the clearance rate from 50% to 78% and made side effects milder.47 That's an add-on result: the kefir worked alongside the medication, not instead of it. Follow your antibiotic's food instructions, too.
Fermented foods side effects & who should be careful
Fermented foods are everyday foods in many traditional diets, and building up slowly helps you avoid early discomfort. The main cautions are temporary gas and bloating at the start (go slower with SIBO), histamine sensitivity, sodium in fermented vegetables and miso, three medication interactions and extra care with unpasteurized foods in pregnancy or with a weakened immune system.
Can fermented foods cause bloating or gas?
Yes, early on, which is why the four-week start plan above builds up slowly. With SIBO or heavy bloating, start with a teaspoon of sauerkraut juice and work up from there,14 and see our SIBO guide if bloating keeps coming back.
Are fermented foods high in histamine?
Many are. Fermentation raises histamine and related compounds, and when researchers compared 10 published low-histamine diets, fermented foods were the only group every one of them excluded.49 If fermented foods reliably bring on flushing, headaches, hives or a stuffy nose, choose milder, less sour ferments or take a break from them, use a probiotic supplement with soil-based organisms while the reaction calms down, then reintroduce small amounts.3 Hives can also signal a food allergy, so stop that food and see your doctor, and get emergency care for lip or throat swelling or trouble breathing. Our guide to histamine intolerance covers the rest.
Do fermented foods interact with medications?
Interaction check: high with MAOI antidepressants and with warfarin, plus a timing caution for ciprofloxacin. All three are easy to plan around. If you take an MAOI antidepressant, tyramine is the concern. Aged and fermented foods carry it, and in someone on an MAOI it can cause a dangerous spike in blood pressure. In lab testing, sauerkraut held 7.75 mg of tyramine per 250 grams, above the 6 mg-per-serving level considered dangerous, and a widely used MAOI diet restricts aged cheese, aged or air-dried meats, sauerkraut, soy sauce and tap beer.5051 Follow the food list from the doctor who prescribed your MAOI.
If you take warfarin, natto is the one to skip, because it's rich enough in vitamin K2 to counteract the drug.52 And if you're prescribed ciprofloxacin, don't take it with yogurt, kefir or milk alone, because dairy can lower its absorption; its label allows taking it with a meal that contains dairy.48
How much sodium is in fermented foods?
The nutrition table above shows how quickly sodium adds up, and miso leads at about 634 mg a tablespoon, more than a quarter of the daily value.22 At that rate, 2 to 3 tablespoons of miso would add about 1,268 to 1,902 mg of sodium, so use miso as a seasoning rather than as your daily ferment. If you're watching blood pressure, keep to small portions, look for lower-sodium versions, and lean on yogurt and natto, which are naturally low in sodium.
Are fermented foods safe during pregnancy or with a weakened immune system?
Pregnancy and a weakened immune system both call for extra care with unpasteurized foods. The FDA advises pregnant women, adults over 65 and people with weakened immune systems to avoid unpasteurized milk products and queso fresco–type cheeses because of listeria risk.38 Yogurt and kefir made from pasteurized milk can still contain live cultures.5 Live microbes also carry more risk for people with severe illness or a compromised immune system,53 so if your immune system is suppressed, such as during chemotherapy, follow your treatment team's food-safety instructions before adding live-culture foods.
Build up slowly, over about four weeks
Choose plain yogurt and kefir, and check kombucha for added sugar
On an MAOI antidepressant, avoid sauerkraut, soy sauce, aged cheese and other high-tyramine foods on your prescriber's list
On warfarin, avoid natto
On ciprofloxacin, don't take it with yogurt, kefir or milk alone; follow the label's food instructions
With histamine reactions, pause or switch to milder ferments and add them back slowly
Watching blood pressure, keep kimchi, sauerkraut and miso portions small
Kombucha can reach 0.5% alcohol or more, so skip it if you avoid alcohol entirely54
Pregnant or immune-suppressed, follow the food-safety guidance on unpasteurized products above
The bottom line
Should you eat fermented foods?
Yes. Fermented foods are one of the simplest, least expensive ways to care for your gut every day, and they bring something few foods can: living microbes, plus the compounds those microbes create. The strongest human evidence supports better digestion and easier lactose digestion, and the Stanford trial showed broader gut diversity and lower inflammatory proteins in just 10 weeks. That long tradition deserves real weight as the research catches up.
Start with a teaspoon or two, build to 2 to 3 tablespoons a day, choose ferments with live cultures that weren't heated after fermenting when live microbes are the point, rotate several kinds, and eat plenty of fiber alongside them. If you take medication or you're pregnant, read the safety section first. You were designed to heal, and a few spoonfuls of something alive, eaten with thanks each day, is one of the simplest ways to work with that design.
Fermented foods: frequently asked questions
What is a fermented food?
A fermented food is made through desired microbial growth, where bacteria, yeasts or molds convert part of the food into acids, gases or alcohol. Yogurt, kefir, sauerkraut, kimchi, miso, natto, tempeh and sourdough all qualify.2
Are all fermented foods probiotic?
No. A food can contain live microbes without qualifying as probiotic, and baking or heating after fermentation may also remove those live microbes, so sourdough bread, tempeh and shelf-stable sauerkraut are fermented but not live, though they can still carry useful compounds made during fermentation.2
What are the best fermented foods for gut health?
Dr. Axe ranks yogurt and kefir first because they tend to carry the most bacteria, followed by sauerkraut and kimchi, kvass, miso and natto.37 Choose versions with live cultures that weren't heated after fermenting, and rotate several kinds through the week.
How much fermented food should I eat per day?
Start with a teaspoon or two and build to 2 to 3 tablespoons a day of fermented vegetables or cultured dairy.13
Is cheese a fermented food?
Yes. Cheese is made by fermenting milk, and aged and raw cheeses can still carry live cultures in smaller amounts. In a 2026 analysis of 20 cohort studies with more than 1.1 million people, those who ate the most cheese had about a 3% lower risk of dying from any cause.12
Are fermented foods good for IBS?
They can help. In the 12 randomized trials that measured it, people with IBS were 22% more likely to report symptom relief with fermented foods, and fermented milk showed a benefit on its own.25
Are fermented foods high in histamine?
Many are, and fermented foods are the one group that all 10 published low-histamine diets reviewed by researchers excluded.49 If they bring on flushing or headaches, switch to milder ferments or take a break.
Is apple cider vinegar fermented?
Are fermented foods good for blood sugar?
They may help. In a meta-analysis of 18 randomized trials in adults with diabetes or prediabetes, fermented foods lowered fasting blood sugar and insulin resistance compared with control diets.11
Are pickles a fermented food?
Some pickles are fermented: microbes turn sugars in the vegetables into acids during brining. Others are acidified with vinegar without fermentation. Look for the word "fermented" or live-culture information on the jar.2
Is sourdough bread fermented?
Yes. The dough ferments before baking, and long fermentation lowers phytic acid; in a study of leavened bran bread, longer fermentation also raised zinc absorption. Baking kills the microbes, so sourdough isn't a probiotic food.29
When is the best time to eat fermented foods?
Choose a time that makes the habit easy, such as yogurt with breakfast or sauerkraut with dinner. The studies cited here don't establish a best time of day. If you take medication, follow its food and timing instructions.
Do fermented foods contain alcohol?
Some do, in small amounts. Kombucha can reach 0.5% alcohol by volume or more during production, at which point federal rules treat it as an alcohol beverage.54
Are fermented foods better than a probiotic supplement?
They do different jobs. Food gives you a wide mix of microbes and the compounds they made, while a supplement gives you specific strains at a known dose, which helps if you don't tolerate fermented foods.
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What changed in this update (September 30, 2026) — Added charts of the Stanford inflammation results and the kefir lactose trial, reported more of the positive results from the pooled studies, added answers on cheese and apple cider vinegar, added study sizes, and tightened repeated material.
What changed in this update (September 26, 2026) — Rewritten to the current DrAxe.com article standard. Added an at-a-glance summary with medication cautions; a nutrition table built from USDA data; an evidence-graded benefits table; the Stanford fermented-food trial stated with its design and limits; newer trials on fresh versus pasteurized sauerkraut, kefir and kombucha; meta-analyses on digestion, IBS, blood sugar and mortality; a live-cultures shopping guide; a gentle four-week start plan; and specific guidance on histamine, sodium, MAOI and warfarin interactions, and food safety. Removed a processed-meat example from the list of fermented foods, and unsourced claims. Every PubMed citation was checked against its NCBI record.
References
- Wastyk HC, Fragiadakis GK, Perelman D, et al. Gut-microbiota-targeted diets modulate human immune status. Cell. 2021;184(16):4137-4153.e14. doi:10.1016/j.cell.2021.06.019. PMID:34256014
- Marco ML, Sanders ME, Gänzle M, et al. The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on fermented foods. Nat Rev Gastroenterol Hepatol. 2021;18(3):196-208. doi:10.1038/s41575-020-00390-5. PMID:33398112
- Axe J. 7 foods that quiet inflammation better than supplements. The Dr. Josh Axe Show. 2026.
- McGovern PE, Zhang J, Tang J, et al. Fermented beverages of pre- and proto-historic China. Proc Natl Acad Sci U S A. 2004;101(51):17593-17598. doi:10.1073/pnas.0407921102. PMID:15590771
- U.S. Food and Drug Administration. 21 CFR 131.200, Yogurt. Electronic Code of Federal Regulations.
- Tsukamoto Y, Ichise H, Kakuda H, et al. Intake of fermented soybean (natto) increases circulating vitamin K2 (menaquinone-7) and gamma-carboxylated osteocalcin concentration in normal individuals. J Bone Miner Metab. 2000;18(4):216-222. doi:10.1007/s007740070023. PMID:10874601
- Schropp N, Bauer A, Stanislas V, et al. Fermented foods and inflammation: a crossover intervention trial with fresh and pasteurized sauerkraut. Eur J Clin Nutr. 2026;80(9):928-935. doi:10.1038/s41430-026-01776-5. PMID:42321414
- Mukherjee A, Farsi DN, Garcia-Gutierrez E, et al. Impact of fermented foods consumption on gastrointestinal wellbeing in healthy adults: a systematic review and meta-analysis. Front Nutr. 2025;12:1668889. doi:10.3389/fnut.2025.1668889. PMID:41141260
- EFSA Panel on Dietetic Products, Nutrition and Allergies (NDA). Scientific Opinion on the substantiation of health claims related to live yoghurt cultures and improved lactose digestion (ID 1143, 2976) pursuant to Article 13(1) of Regulation (EC) No 1924/2006. EFSA Journal. 2010;8(10):1763. doi:10.2903/j.efsa.2010.1763
- SaeidiFard N, Djafarian K, Shab-Bidar S. Fermented foods and inflammation: A systematic review and meta-analysis of randomized controlled trials. Clin Nutr ESPEN. 2020;35:30-39. doi:10.1016/j.clnesp.2019.10.010. PMID:31987119
- Zhang XF, Qi Y, Zhang YP, et al. Fermented foods and metabolic outcomes in diabetes and prediabetes: a systematic review and meta-analysis of randomized controlled trials. Crit Rev Food Sci Nutr. 2024;64(26):9514-9531. doi:10.1080/10408398.2023.2213770. PMID:37204758
- Matalas A, Panagiotakos D, Fardet A, et al. Fermented foods consumption, all-cause, and cause-specific mortality: a meta-analysis of prospective cohort studies. Front Nutr. 2026;13:1714437. doi:10.3389/fnut.2026.1714437. PMID:41835372
- Axe J. The Anti-Inflammatory Reset. DrAxe.com protocol. 2026.
- Axe J. Top 5 ways to heal leaky gut naturally. The Dr. Josh Axe Show. 2024.
- Axe J, Rubin J. The Biblio Diet. 2025.
- Lee M, Song JH, Park JM, et al. Bacterial diversity in Korean temple kimchi fermentation. Food Res Int. 2019;126:108592. doi:10.1016/j.foodres.2019.108592. PMID:31732073
- Kojima A, Ikehara S, Kamiya K, et al. Natto intake is inversely associated with osteoporotic fracture risk in postmenopausal Japanese women. J Nutr. 2020;150(3):599-605. doi:10.1093/jn/nxz292. PMID:31825069
- U.S. Department of Agriculture, Agricultural Research Service. FoodData Central: Yogurt, plain, whole milk. FDC ID 171284. fdc.nal.usda.gov
- U.S. Department of Agriculture, Agricultural Research Service. FoodData Central: Natto. FDC ID 172443. fdc.nal.usda.gov
- U.S. Department of Agriculture, Agricultural Research Service. FoodData Central: Sauerkraut, canned, solids and liquids. FDC ID 169279. fdc.nal.usda.gov
- U.S. Department of Agriculture, Agricultural Research Service. FoodData Central: Cabbage, kimchi. FDC ID 170392. fdc.nal.usda.gov
- U.S. Department of Agriculture, Agricultural Research Service. FoodData Central: Miso. FDC ID 172442. fdc.nal.usda.gov
- U.S. Food and Drug Administration. Daily Value on the Nutrition and Supplement Facts labels. fda.gov.
- Hertzler SR, Clancy SM. Kefir improves lactose digestion and tolerance in adults with lactose maldigestion. J Am Diet Assoc. 2003;103(5):582-587. doi:10.1053/jada.2003.50111. PMID:12728216
- Ding L, Duan J, Yang T, et al. Efficacy of fermented foods in irritable bowel syndrome: a systematic review and meta-analysis of randomized controlled trials. Front Nutr. 2024;11:1494118. doi:10.3389/fnut.2024.1494118. PMID:39839290
- Yahyapoor F, Haghighat N, Sohrabi Z, et al. Effects of kefir consumption on cardiometabolic risk factors: a systematic review and meta-analysis of randomized controlled trials. Curr Drug Targets. 2023;24(7):599-612. doi:10.2174/1389450124666230427095742. PMID:37102491
- Thriene K, Stanislas V, Huang KD, et al. Impact of yogurt and rolled oats consumption on the gut microbiome: a randomized crossover study displaying individual responses and general resilience. J Nutr. 2026;156(4):101408. doi:10.1016/j.tjnut.2026.101408. PMID:41687784
- Savaiano DA. Lactose digestion from yogurt: mechanism and relevance. Am J Clin Nutr. 2014;99(5 Suppl):1251S-1255S. doi:10.3945/ajcn.113.073023. PMID:24695892
- Nävert B, Sandström B, Cederblad A. Reduction of the phytate content of bran by leavening in bread and its effect on zinc absorption in man. Br J Nutr. 1985;53(1):47-53. doi:10.1079/bjn19850009. PMID:2998440
- Salminen S, Collado MC, Endo A, et al. The International Scientific Association of Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of postbiotics. Nat Rev Gastroenterol Hepatol. 2021;18(9):649-667. doi:10.1038/s41575-021-00440-6. PMID:33948025
- Schropp N, Bauer A, Stanislas V, et al. The impact of regular sauerkraut consumption on the human gut microbiota: a crossover intervention trial. Microbiome. 2025;13(1):52. doi:10.1186/s40168-024-02016-3. PMID:39940045
- Koh A, De Vadder F, Kovatcheva-Datchary P, et al. From dietary fiber to host physiology: short-chain fatty acids as key bacterial metabolites. Cell. 2016;165(6):1332-1345. doi:10.1016/j.cell.2016.05.041. PMID:27259147
- Nielsen ES, Garnås E, Jensen KJ, et al. Lacto-fermented sauerkraut improves symptoms in IBS patients independent of product pasteurisation - a pilot study. Food Funct. 2018;9(10):5323-5335. doi:10.1039/c8fo00968f. PMID:30256365
- Ahn S, Darooghegi Mofrad M, Nosal BM, et al. Effects of fermented kimchi consumption on anthropometric and blood cardiometabolic indicators: a systematic review and meta-analysis of intervention studies and prospective cohort studies. Nutr Rev. 2025;83(7):e1441-e1457. doi:10.1093/nutrit/nuae167. PMID:39545368
- Companys J, Pla-Pagà L, Calderón-Pérez L, et al. Fermented dairy products, probiotic supplementation, and cardiometabolic diseases: a systematic review and meta-analysis. Adv Nutr. 2020;11(4):834-863. doi:10.1093/advances/nmaa030. PMID:32277831
- Bakırhan H, Ozyurek Arpa F, Pehlivan M, et al. Effects of kefir consumption on gastrointestinal health, biochemical parameters, sleep, and mental well-being in healthy young adults: a randomized controlled trial. J Nutr. 2026;156(1):101247. doi:10.1016/j.tjnut.2025.11.016. PMID:41314291
- Axe J. The #1 supplement to heal your gut, burn fat, and boost immunity. The Dr. Josh Axe Show. 2025.
- U.S. Food and Drug Administration. Listeria (Listeriosis). fda.gov.
- Jung MY, Kim TW, Lee C, et al. Role of jeotgal, a Korean traditional fermented fish sauce, in microbial dynamics and metabolite profiles during kimchi fermentation. Food Chem. 2018;265:135-143. doi:10.1016/j.foodchem.2018.05.093. PMID:29884364
- Axe J. Natural sunscreens, EMF exposure, & the best dairy alternatives: Q&A. The Dr. Josh Axe Show. 2024.
- Nikolaou A, Assunção R, Cvetković B, et al. Effects of sourdough- or regular-bread fermentation, and phytate reduction on iron bioavailability, absorption, and iron status in humans: a systematic review of intervention studies. Front Nutr. 2026;13:1778997. doi:10.3389/fnut.2026.1778997. PMID:42163962
- Fraiz GM, Bonifácio DB, Lacerda UV, et al. Green tea kombucha impacts inflammation and salivary microbiota in individuals with excess body weight: a randomized controlled trial. Nutrients. 2024;16(18):3186. doi:10.3390/nu16183186. PMID:39339787
- Ecklu-Mensah G, Miller R, Maseng MG, et al. Modulating the human gut microbiome and health markers through kombucha consumption: a controlled clinical study. Sci Rep. 2024;14(1):31647. doi:10.1038/s41598-024-80281-w. PMID:39738315
- National Center for Home Food Preservation, University of Georgia. Sauerkraut (adapted from the USDA Complete Guide to Home Canning, 2015). nchfp.uga.edu
- Beniwal RS, Arena VC, Thomas L, et al. A randomized trial of yogurt for prevention of antibiotic-associated diarrhea. Dig Dis Sci. 2003;48(10):2077-2082. doi:10.1023/a:1026155328638. PMID:14627358
- Patro-Golab B, Shamir R, Szajewska H. Yogurt for treating antibiotic-associated diarrhea: systematic review and meta-analysis. Nutrition. 2015;31(6):796-800. doi:10.1016/j.nut.2014.11.013. PMID:25933485
- Bekar O, Yilmaz Y, Gulten M. Kefir improves the efficacy and tolerability of triple therapy in eradicating Helicobacter pylori. J Med Food. 2011;14(4):344-347. doi:10.1089/jmf.2010.0099. PMID:21186984
- U.S. National Library of Medicine. DailyMed: Ciprofloxacin tablets, prescribing information (Dosage and Administration; Patient Counseling Information). dailymed.nlm.nih.gov
- Sánchez-Pérez S, Comas-Basté O, Veciana-Nogués MT, et al. Low-histamine diets: is the exclusion of foods justified by their histamine content? Nutrients. 2021;13(5):1395. doi:10.3390/nu13051395. PMID:33919293
- Walker SE, Shulman KI, Tailor SA, et al. Tyramine content of previously restricted foods in monoamine oxidase inhibitor diets. J Clin Psychopharmacol. 1996;16(5):383-388. doi:10.1097/00004714-199610000-00007. PMID:8889911
- Gardner DM, Shulman KI, Walker SE, et al. The making of a user friendly MAOI diet. J Clin Psychiatry. 1996;57(3):99-104. PMID:8617704
- Nakajima T, Taya Y, Nishikawa T, et al. First clinical trial of a newly developed, low menaquinone-7, fermented soybean natto in warfarin-dependent patients. J Med Food. 2021;24(8):860-865. doi:10.1089/jmf.2021.0036. PMID:34406879
- National Center for Complementary and Integrative Health. Probiotics: usefulness and safety. nccih.nih.gov.
- Alcohol and Tobacco Tax and Trade Bureau. Kombucha. ttb.gov.
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